Code_saturne 1.4b released!
16 years 7 months ago #2251
by David Monfort
Replied by David Monfort on topic Re:Code_saturne 1.4b released!
No problem 
Syntax for parallel runs has changed between versions 1.3.2 and 1.4.b (from -p 2 to -mpi for a two-processor run) but in your case, as the -mpi is not recognized as a valid option by cs14.exe, this means that Code_Saturne has not been compiled with MPI support.
You can either try to set the MPI library path to /usr/lib/openmpi in the setup file, or set the compilers to mpicc and mpif77. This latter solution is not my preferred one because it links even serial executables with MPI libraries (like ecs), but it do work.
I forgot... you have to re-install only FVM and the kernel (ncs) as they both need MPI for parallel runs.
Post edited by: David Monfort, at: 2008/09/15 23:45<br /><br />Post edited by: David Monfort, at: 2008/09/15 23:49
Syntax for parallel runs has changed between versions 1.3.2 and 1.4.b (from -p 2 to -mpi for a two-processor run) but in your case, as the -mpi is not recognized as a valid option by cs14.exe, this means that Code_Saturne has not been compiled with MPI support.
You can either try to set the MPI library path to /usr/lib/openmpi in the setup file, or set the compilers to mpicc and mpif77. This latter solution is not my preferred one because it links even serial executables with MPI libraries (like ecs), but it do work.
I forgot... you have to re-install only FVM and the kernel (ncs) as they both need MPI for parallel runs.
Post edited by: David Monfort, at: 2008/09/15 23:45<br /><br />Post edited by: David Monfort, at: 2008/09/15 23:49
16 years 7 months ago #2252
by Claus
Code_Aster release : STA11.4 on OpenSUSE 12.3 64 bits - EDF/Intel version
Replied by Claus on topic Re:Code_saturne 1.4b released!
Seems like I HAVE to be draggede through every little detail of each lib. 
I've compiled fvm and ncs again and MPI support was found etc.
now, one would think everything is fine then:
[code:1] ********************************************
Calculation starting
********************************************
libibverbs: Fatal: couldn't read uverbs ABI version.
[0,1,0]: OpenIB on host claus-desktop was unable to find any HCAs.
Another transport will be used instead, although this may result in
lower performance.
libibverbs: Fatal: couldn't read uverbs ABI version.
[0,1,1]: OpenIB on host claus-desktop was unable to find any HCAs.
Another transport will be used instead, although this may result in
lower performance.
[claus-desktop:31850] *** Process received signal ***
[claus-desktop:31850] Signal: Segmentation fault (11)
[claus-desktop:31850] Signal code: Address not mapped (1)
[claus-desktop:31850] Failing at address: 0x3c
[claus-desktop:31850] [ 0] [0xb7f5a440]
[claus-desktop:31850] [ 1] /usr/lib/libhdf5-1.6.5.so.0(PMPI_Comm_rank+0x25) [0xb7e39465]
[claus-desktop:31850] [ 2] /root/tmp_Saturne/ASDFASDF.2.09161143/cs14.exe(cs_base_mpi_init+0x4f) [0x80b99d7]
[claus-desktop:31850] [ 3] /root/tmp_Saturne/ASDFASDF.2.09161143/cs14.exe(main+0x5d) [0x8061b0d]
[claus-desktop:31850] [ 4] /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0) [0xb7858450]
[claus-desktop:31850] [ 5] /root/tmp_Saturne/ASDFASDF.2.09161143/cs14.exe [0x8061a41]
[claus-desktop:31850] *** End of error message ***
Segmentation fault
[claus-desktop:31848] *** Process received signal ***
[claus-desktop:31848] Signal: Segmentation fault (11)
[claus-desktop:31848] Signal code: Address not mapped (1)
[claus-desktop:31848] Failing at address: 0x3c
[claus-desktop:31848] [ 0] [0xb7f88440]
[claus-desktop:31848] [ 1] /usr/lib/libhdf5-1.6.5.so.0(PMPI_Comm_rank+0x25) [0xb7e67465]
[claus-desktop:31848] [ 2] /root/tmp_Saturne/ASDFASDF.2.09161143/cs14.exe(cs_base_mpi_init+0x4f) [0x80b99d7]
[claus-desktop:31848] [ 3] /root/tmp_Saturne/ASDFASDF.2.09161143/cs14.exe(main+0x5d) [0x8061b0d]
[claus-desktop:31848] [ 4] /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0) [0xb7886450]
[claus-desktop:31848] [ 5] /root/tmp_Saturne/ASDFASDF.2.09161143/cs14.exe [0x8061a41]
[claus-desktop:31848] *** End of error message ***
Segmentation fault
Error running the calculation.
Check Kernel log (listing) and error* files for details
********************************************
Error in calculation stage.
********************************************
root@claus-desktop:/opt/code_saturne/ASDFASDF/2/DATA#
[/code:1]
Obviously this is a openmpi problem - but I can't crack it right now - all libs. resembling anything mentioned here is installed - I think
-- hah I'll take a break now;)
I've compiled fvm and ncs again and MPI support was found etc.
now, one would think everything is fine then:
[code:1] ********************************************
Calculation starting
********************************************
libibverbs: Fatal: couldn't read uverbs ABI version.
[0,1,0]: OpenIB on host claus-desktop was unable to find any HCAs.
Another transport will be used instead, although this may result in
lower performance.
libibverbs: Fatal: couldn't read uverbs ABI version.
[0,1,1]: OpenIB on host claus-desktop was unable to find any HCAs.
Another transport will be used instead, although this may result in
lower performance.
[claus-desktop:31850] *** Process received signal ***
[claus-desktop:31850] Signal: Segmentation fault (11)
[claus-desktop:31850] Signal code: Address not mapped (1)
[claus-desktop:31850] Failing at address: 0x3c
[claus-desktop:31850] [ 0] [0xb7f5a440]
[claus-desktop:31850] [ 1] /usr/lib/libhdf5-1.6.5.so.0(PMPI_Comm_rank+0x25) [0xb7e39465]
[claus-desktop:31850] [ 2] /root/tmp_Saturne/ASDFASDF.2.09161143/cs14.exe(cs_base_mpi_init+0x4f) [0x80b99d7]
[claus-desktop:31850] [ 3] /root/tmp_Saturne/ASDFASDF.2.09161143/cs14.exe(main+0x5d) [0x8061b0d]
[claus-desktop:31850] [ 4] /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0) [0xb7858450]
[claus-desktop:31850] [ 5] /root/tmp_Saturne/ASDFASDF.2.09161143/cs14.exe [0x8061a41]
[claus-desktop:31850] *** End of error message ***
Segmentation fault
[claus-desktop:31848] *** Process received signal ***
[claus-desktop:31848] Signal: Segmentation fault (11)
[claus-desktop:31848] Signal code: Address not mapped (1)
[claus-desktop:31848] Failing at address: 0x3c
[claus-desktop:31848] [ 0] [0xb7f88440]
[claus-desktop:31848] [ 1] /usr/lib/libhdf5-1.6.5.so.0(PMPI_Comm_rank+0x25) [0xb7e67465]
[claus-desktop:31848] [ 2] /root/tmp_Saturne/ASDFASDF.2.09161143/cs14.exe(cs_base_mpi_init+0x4f) [0x80b99d7]
[claus-desktop:31848] [ 3] /root/tmp_Saturne/ASDFASDF.2.09161143/cs14.exe(main+0x5d) [0x8061b0d]
[claus-desktop:31848] [ 4] /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0) [0xb7886450]
[claus-desktop:31848] [ 5] /root/tmp_Saturne/ASDFASDF.2.09161143/cs14.exe [0x8061a41]
[claus-desktop:31848] *** End of error message ***
Segmentation fault
Error running the calculation.
Check Kernel log (listing) and error* files for details
********************************************
Error in calculation stage.
********************************************
root@claus-desktop:/opt/code_saturne/ASDFASDF/2/DATA#
Attachment summary.gz not found
Obviously this is a openmpi problem - but I can't crack it right now - all libs. resembling anything mentioned here is installed - I think
-- hah I'll take a break now;) Code_Aster release : STA11.4 on OpenSUSE 12.3 64 bits - EDF/Intel version
16 years 7 months ago #2254
by Claus
Code_Aster release : STA11.4 on OpenSUSE 12.3 64 bits - EDF/Intel version
Replied by Claus on topic Re:Code_saturne 1.4b released!
I love my goddamn STUBBORNNESS (and your help) 
Got I working now with hdf-serial - I missed that one when I checked for libs.
I think I'll do a short writeup for an ubuntu-install, exemplifying what not to do
Well - seems like it is working fine now - I'll be back when I start using it for real
<br /><br />Post edited by: Claus, at: 2008/09/16 14:24
Got I working now with hdf-serial - I missed that one when I checked for libs.
I think I'll do a short writeup for an ubuntu-install, exemplifying what not to do
Well - seems like it is working fine now - I'll be back when I start using it for real
Code_Aster release : STA11.4 on OpenSUSE 12.3 64 bits - EDF/Intel version
16 years 7 months ago #2255
by David Monfort
Replied by David Monfort on topic Re:Code_saturne 1.4b released!
Nice job! 
I had planned to write a short tutorial on how to install Code_Saturne on several distros but due a lack of time, I postponed this task. Maybe it would help people...
I had planned to write a short tutorial on how to install Code_Saturne on several distros but due a lack of time, I postponed this task. Maybe it would help people...
16 years 7 months ago #2256
by Claus
Code_Aster release : STA11.4 on OpenSUSE 12.3 64 bits - EDF/Intel version
Replied by Claus on topic Re:Code_saturne 1.4b released!
Well then I'll write a short guide to installing on ubuntu, since Im going to install it on my 8.04 laptop later today and I can do it step by step on a fresh install.
I'll try to make it as generic as possible, then hopefully you can cut/paste some of it to save some time on other distributions
I'll try to make it as generic as possible, then hopefully you can cut/paste some of it to save some time on other distributions
Code_Aster release : STA11.4 on OpenSUSE 12.3 64 bits - EDF/Intel version
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