Code Saturne NCS-installation fails with Error 2

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11 years 7 months ago #3664 by Patrick
Hello,

i'd like to use CS for turbine combustion simulation, but the installation has an error while comiling NCS.
I tried so much to fix it, but nothing worked.

This is my first and last part of install_saturne.log:
[code:1]checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln -s works... yes
checking for a sed that does not truncate output... /usr/bin/sed
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran... -L/usr/lib64/gcc/x86_64-suse-linux/4.4 -L/usr/lib64/gcc/x86_64-suse-linux/4.4/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.4/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.4/../../.. -lgfortranbegin -lgfortran -lm
configure: sourcing config/cs_auto_flags.sh (test for known compilers)
compiler 'gcc' is GNU gcc-4.4.1
compiler 'gfortran' is gfortran
compiler 'gfortran' is GNU gfortran-4.4.1
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/x86_64-suse-linux/bin/ld
checking if the linker (/usr/x86_64-suse-linux/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B«») interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/x86_64-suse-linux/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... yes
checking for pid_t... yes
checking whether time.h and sys/time.h may both be included... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for long long... yes
checking for unsigned long long... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for ptrdiff_t... yes
checking size of void *... 8
checking size of short... 2
checking size of int... 4
checking size of long... 8
checking size of float... 4
checking size of double... 8
checking for bft version >= "1.1.0"... compatible bft version found
checking for fvm version >= "0.14.0"... compatible fvm version found
checking for fvm_coupling discovery functions... no
checking mei_evaluate.h usability... yes
checking mei_evaluate.h presence... yes
checking for mei_evaluate.h... yes
checking for mei_evaluate in -lmei... yes
checking libxml/parser.h usability... yes
checking libxml/parser.h presence... yes
checking for libxml/parser.h... yes
checking for xmlInitParser in -lxml2... yes
checking for threaded ATLAS BLAS... no
checking for ATLAS BLAS... no
checking for smp ESSL BLAS... no
checking for ESSL BLAS... no
checking for threaded MKL BLAS... no
checking for MKL BLAS... no
checking for legacy C BLAS... no
checking for legacy Fortran BLAS... yes
checking for MPI (MPI compiler wrapper test)... no
checking for MPI (basic test)... no
checking for MPI (mpich test)... no
checking for MPI (lam-mpi test)... no
checking for g77... no
checking for xlf... no
checking for f77... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for xlf90... no
checking for f90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
configure: WARNING: cannot find syrthes.profile
checking for cs_preprocess... /home/pat/Saturne/opt/cs-2.0-beta2
checking for python... /usr/bin/python
checking whether /usr/bin/python version >= 2.3... yes
checking for /usr/bin/python version... 2.6
checking for /usr/bin/python platform... linux2
checking for /usr/bin/python script directory... ${prefix}/lib/python2.6/site-packages
checking for /usr/bin/python extension module directory... ${exec_prefix}/lib64/python2.6/site-packages
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for sys/stat.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for snprintf... yes
checking for getcwd... yes
checking for sleep... yes
checking for getpwuid... yes
checking for geteuid... yes
checking for uname... yes
checking for dlopen... yes
checking whether NLS is requested... yes
checking for msgfmt... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/msgfmt
checking for xgettext... /usr/bin/xgettext
checking for msgmerge... /usr/bin/msgmerge
checking for ld used by GCC... /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) is GNU ld... yes
checking for shared library run path origin... done
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
configure: initializing cs_config_comments_include
configure: closing cs_config_comments_include
configure: creating ./config.status
config.status: creating Makefile
config.status: creating po/Makefile.in
config.status: creating src/Makefile
config.status: creating src/apps/Makefile
config.status: creating src/base/Makefile
config.status: creating src/atmo/Makefile
config.status: creating src/cfbl/Makefile
config.status: creating src/cogz/Makefile
config.status: creating src/cplv/Makefile
config.status: creating src/ctwr/Makefile
config.status: creating src/elec/Makefile
config.status: creating src/fuel/Makefile
config.status: creating src/mati/Makefile
config.status: creating src/pprt/Makefile
config.status: creating src/lagr/Makefile
config.status: creating src/rayt/Makefile
config.status: creating libsyrcs/Makefile
config.status: creating gui/Makefile
config.status: creating gui/Base/Makefile
config.status: creating gui/Pages/Makefile
config.status: creating doc/Makefile
config.status: creating doc/style/csvers.tex
config.status: creating doc/howto/Makefile
config.status: creating doc/howto/graphics/Makefile
config.status: creating doc/refcard/Makefile
config.status: creating doc/refcard/graphics/Makefile
config.status: creating doc/theory/Makefile
config.status: creating doc/theory/graphics/Makefile
config.status: creating doc/tutorial/Makefile
config.status: creating doc/tutorial/graphics/Makefile
config.status: creating doc/user/Makefile
config.status: creating doc/user/graphics/Makefile
config.status: creating bin/cs
config.status: creating bin/cs_config.py
config.status: creating bin/runcase
config.status: creating bin/runcase_coupling
config.status: creating bin/SaturneGUI
config.status: creating cs_config.h
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing po-directories commands
config.status: creating po/POTFILES
config.status: creating po/Makefile

Configuration options:
use debugging code: true
MPI (Message Passing Interface) support: no
OpenMP support: no
BLAS (Basic Linear Algebra Subprograms) support: yes
Libxml2 (XML Reader) support: yes
MEI (Mathematical Expressions Interpreter) support: yes
SYRTHES 3 coupling support: no
IP socket support (for SYRTHES 3 or CFD_Proxy): yes
Dynamic loader support (for YACS): yes

The package has been configured. Type:
make
make install

To generate and install the Code_Saturne kernel

make all-recursive
make[1]: Entering directory `/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build'
Making all in src
make[2]: Entering directory `/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src'
Making all in base[/code:1]<br /><br />Post edited by: Patrick, at: 2009/11/30 21:52

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11 years 7 months ago #3665 by Patrick
The last part of the log:

[code:1]libtool: compile: gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c /home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray1.f90 -fPIC -o .libs/usray1.o
libtool: compile: gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c /home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray1.f90 -o usray1.o &gt;/dev/null 2&gt;&amp;1
/bin/sh ../../libtool --mode=compile gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c -o usray2.lo `test -f '/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray2.f90' || echo '/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/src/rayt/'`/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray2.f90
libtool: compile: gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c /home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray2.f90 -fPIC -o .libs/usray2.o
libtool: compile: gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c /home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray2.f90 -o usray2.o &gt;/dev/null 2&gt;&amp;1
/bin/sh ../../libtool --mode=compile gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c -o usray3.lo `test -f '/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray3.f90' || echo '/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/src/rayt/'`/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray3.f90
libtool: compile: gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c /home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray3.f90 -fPIC -o .libs/usray3.o
libtool: compile: gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c /home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray3.f90 -o usray3.o &gt;/dev/null 2&gt;&amp;1
/bin/sh ../../libtool --mode=compile gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c -o usray4.lo `test -f '/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray4.f90' || echo '/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/src/rayt/'`/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray4.f90
libtool: compile: gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c /home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray4.f90 -fPIC -o .libs/usray4.o
libtool: compile: gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c /home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray4.f90 -o usray4.o &gt;/dev/null 2&gt;&amp;1
/bin/sh ../../libtool --mode=compile gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c -o usray5.lo `test -f '/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray5.f90' || echo '/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/src/rayt/'`/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray5.f90
libtool: compile: gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c /home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray5.f90 -fPIC -o .libs/usray5.o
libtool: compile: gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -c /home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/users/rayt/usray5.f90 -o usray5.o &gt;/dev/null 2&gt;&amp;1
/bin/sh ../../libtool --mode=link gfortran -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/pprt -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/cplv -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/fuel -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/rayt -g -fbounds-check -x f95-cpp-input -no-undefined -rdynamic -g -o libcsrayt.la memra1.lo memra2.lo memra3.lo raycli.lo raydak.lo raydir.lo raydom.lo raylec.lo rayopt.lo rayout.lo raypar.lo raypun.lo raysca.lo raysol.lo rmodak.lo usray1.lo usray2.lo usray3.lo usray4.lo usray5.lo -ldl
libtool: link: ar cru .libs/libcsrayt.a .libs/memra1.o .libs/memra2.o .libs/memra3.o .libs/raycli.o .libs/raydak.o .libs/raydir.o .libs/raydom.o .libs/raylec.o .libs/rayopt.o .libs/rayout.o .libs/raypar.o .libs/raypun.o .libs/raysca.o .libs/raysol.o .libs/rmodak.o .libs/usray1.o .libs/usray2.o .libs/usray3.o .libs/usray4.o .libs/usray5.o
libtool: link: ranlib .libs/libcsrayt.a
libtool: link: ( cd &quot;.libs&quot; &amp;&amp; rm -f &quot;libcsrayt.la&quot; &amp;&amp; ln -s &quot;../libcsrayt.la&quot; &quot;libcsrayt.la&quot; )
make[3]: Leaving directory `/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/rayt'
Making all in apps
make[3]: Entering directory `/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps'
/bin/sh ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/src/apps -I../.. -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/ctwr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/opt/cs-2.0-beta2/include -I/home/pat/Saturne/opt/cs-2.0-beta2/include -I/home/pat/Saturne/opt/cs-2.0-beta2/include -I/home/pat/Saturne/opt/libxml2-2.6.32/include/libxml2 -D_POSIX_SOURCE -DDEBUG -g -std=c99 -funsigned-char -pedantic -W -Wall -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wnested-externs -Wunused -Wfloat-equal -MT cs_solver.lo -MD -MP -MF .deps/cs_solver.Tpo -c -o cs_solver.lo /home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/src/apps/cs_solver.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/src/apps -I../.. -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/ctwr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/opt/cs-2.0-beta2/include -I/home/pat/Saturne/opt/cs-2.0-beta2/include -I/home/pat/Saturne/opt/cs-2.0-beta2/include -I/home/pat/Saturne/opt/libxml2-2.6.32/include/libxml2 -D_POSIX_SOURCE -DDEBUG -g -std=c99 -funsigned-char -pedantic -W -Wall -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wnested-externs -Wunused -Wfloat-equal -MT cs_solver.lo -MD -MP -MF .deps/cs_solver.Tpo -c /home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/src/apps/cs_solver.c -fPIC -DPIC -o .libs/cs_solver.o
/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/src/apps/cs_solver.c:137: warning: ‘app_num’ defined but not used
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/src/apps -I../.. -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/base -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/ctwr -I/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/include/lagr -I/home/pat/Saturne/opt/cs-2.0-beta2/include -I/home/pat/Saturne/opt/cs-2.0-beta2/include -I/home/pat/Saturne/opt/cs-2.0-beta2/include -I/home/pat/Saturne/opt/libxml2-2.6.32/include/libxml2 -D_POSIX_SOURCE -DDEBUG -g -std=c99 -funsigned-char -pedantic -W -Wall -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wnested-externs -Wunused -Wfloat-equal -MT cs_solver.lo -MD -MP -MF .deps/cs_solver.Tpo -c /home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2/src/apps/cs_solver.c -o cs_solver.o &gt;/dev/null 2&gt;&amp;1
mv -f .deps/cs_solver.Tpo .deps/cs_solver.Plo
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -std=c99 -funsigned-char -pedantic -W -Wall -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wnested-externs -Wunused -Wfloat-equal -no-undefined -version 0:0:0 -rdynamic -g -o libsaturne.la -rpath /home/pat/Saturne/opt/cs-2.0-beta2/lib cs_solver.lo ../../src/base/libcshot.la ../../src/base/libcsbase.la ../../src/pprt/libcspprt.la ../../src/atmo/libcsatmo.la ../../src/cfbl/libcscfbl.la ../../src/cogz/libcscogz.la ../../src/cplv/libcscplv.la ../../src/ctwr/libcsctwr.la ../../src/elec/libcselec.la ../../src/fuel/libcsfuel.la ../../src/lagr/libcslagr.la ../../src/mati/libcsmati.la ../../src/rayt/libcsrayt.la -ldl
libtool: link: gcc -shared .libs/cs_solver.o -Wl,--whole-archive ../../src/base/.libs/libcshot.a ../../src/base/.libs/libcsbase.a ../../src/pprt/.libs/libcspprt.a ../../src/atmo/.libs/libcsatmo.a ../../src/cfbl/.libs/libcscfbl.a ../../src/cogz/.libs/libcscogz.a ../../src/cplv/.libs/libcscplv.a ../../src/ctwr/.libs/libcsctwr.a ../../src/elec/.libs/libcselec.a ../../src/fuel/.libs/libcsfuel.a ../../src/lagr/.libs/libcslagr.a ../../src/mati/.libs/libcsmati.a ../../src/rayt/.libs/libcsrayt.a -Wl,--no-whole-archive -ldl -Wl,-soname -Wl,libsaturne.so.0 -o .libs/libsaturne.so.0.0.0
libtool: link: (cd &quot;.libs&quot; &amp;&amp; rm -f &quot;libsaturne.so.0&quot; &amp;&amp; ln -s &quot;libsaturne.so.0.0.0&quot; &quot;libsaturne.so.0&quot;«»)
libtool: link: (cd &quot;.libs&quot; &amp;&amp; rm -f &quot;libsaturne.so&quot; &amp;&amp; ln -s &quot;libsaturne.so.0.0.0&quot; &quot;libsaturne.so&quot;«»)
libtool: link: (cd .libs/libsaturne.lax/libcshot.a &amp;&amp; ar x &quot;/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps/../../src/base/.libs/libcshot.a&quot;«»)
libtool: link: (cd .libs/libsaturne.lax/libcsbase.a &amp;&amp; ar x &quot;/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps/../../src/base/.libs/libcsbase.a&quot;«»)
libtool: link: (cd .libs/libsaturne.lax/libcspprt.a &amp;&amp; ar x &quot;/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps/../../src/pprt/.libs/libcspprt.a&quot;«»)
libtool: link: (cd .libs/libsaturne.lax/libcsatmo.a &amp;&amp; ar x &quot;/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps/../../src/atmo/.libs/libcsatmo.a&quot;«»)
libtool: link: (cd .libs/libsaturne.lax/libcscfbl.a &amp;&amp; ar x &quot;/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps/../../src/cfbl/.libs/libcscfbl.a&quot;«»)
libtool: link: (cd .libs/libsaturne.lax/libcscogz.a &amp;&amp; ar x &quot;/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps/../../src/cogz/.libs/libcscogz.a&quot;«»)
libtool: link: (cd .libs/libsaturne.lax/libcscplv.a &amp;&amp; ar x &quot;/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps/../../src/cplv/.libs/libcscplv.a&quot;«»)
libtool: link: (cd .libs/libsaturne.lax/libcsctwr.a &amp;&amp; ar x &quot;/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps/../../src/ctwr/.libs/libcsctwr.a&quot;«»)
libtool: link: (cd .libs/libsaturne.lax/libcselec.a &amp;&amp; ar x &quot;/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps/../../src/elec/.libs/libcselec.a&quot;«»)
libtool: link: (cd .libs/libsaturne.lax/libcsfuel.a &amp;&amp; ar x &quot;/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps/../../src/fuel/.libs/libcsfuel.a&quot;«»)
libtool: link: (cd .libs/libsaturne.lax/libcslagr.a &amp;&amp; ar x &quot;/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps/../../src/lagr/.libs/libcslagr.a&quot;«»)
libtool: link: (cd .libs/libsaturne.lax/libcsmati.a &amp;&amp; ar x &quot;/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps/../../src/mati/.libs/libcsmati.a&quot;«»)
libtool: link: (cd .libs/libsaturne.lax/libcsrayt.a &amp;&amp; ar x &quot;/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps/../../src/rayt/.libs/libcsrayt.a&quot;«»)
libtool: link: ar cru .libs/libsaturne.a cs_solver.o .libs/libsaturne.lax/libcshot.a/libcshot_la-prodsc.o .libs/libsaturne.lax/libcshot.a/libcshot_la-gradmc.o .libs/libsaturne.lax/libcshot.a/libcshot_la-prods2.o .libs/libsaturne.lax/libcshot.a/libcshot_la-prods3.o .libs/libsaturne.lax/libcshot.a/libcshot_la-promav.o .libs/libsaturne.lax/libcshot.a/libcshot_la-cs_blas.o .libs/libsaturne.lax/libcshot.a/libcshot_la-cs_matrix.o .libs/libsaturne.lax/libcshot.a/libcshot_la-gradrc.o .libs/libsaturne.lax/libcshot.a/libcshot_la-cs_sles.o .libs/libsaturne.lax/libcshot.a/libcshot_la-cs_benchmark.o .libs/libsaturne.lax/libcsbase.a/cs_join.o .libs/libsaturne.lax/libcsbase.a/ussatc.o .libs/libsaturne.lax/libcsbase.a/csflsh.o .libs/libsaturne.lax/libcsbase.a/memphy.o .libs/libsaturne.lax/libcsbase.a/alelap.o .libs/libsaturne.lax/libcsbase.a/iniusi.o .libs/libsaturne.lax/libcsbase.a/iprbla.o .libs/libsaturne.lax/libcsbase.a/visdyn.o .libs/libsaturne.lax/libcsbase.a/usmpst.o .libs/libsaturne.lax/libcsbase.a/memtsm.o .libs/libsaturne.lax/libcsbase.a/cou1do.o .libs/libsaturne.lax/libcsbase.a/vissec.o .libs/libsaturne.lax/libcsbase.a/cs_join_split.o .libs/libsaturne.lax/libcsbase.a/bilsc2.o .libs/libsaturne.lax/libcsbase.a/memdtv.o .libs/libsaturne.lax/libcsbase.a/majgeo.o .libs/libsaturne.lax/libcsbase.a/alemaj.o .libs/libsaturne.lax/libcsbase.a/cscini.o .libs/libsaturne.lax/libcsbase.a/lecamx.o .libs/libsaturne.lax/libcsbase.a/coupbi.o .libs/libsaturne.lax/libcsbase.a/clprij.o .libs/libsaturne.lax/libcsbase.a/ecrava.o .libs/libsaturne.lax/libcsbase.a/cs_gui_radiative_transfer.o .libs/libsaturne.lax/libcsbase.a/cs_syr4_coupling.o .libs/libsaturne.lax/libcsbase.a/inipst.o .libs/libsaturne.lax/libcsbase.a/tstvec.o .libs/libsaturne.lax/libcsbase.a/clsurn.o .libs/libsaturne.lax/libcsbase.a/cregeo.o .libs/libsaturne.lax/libcsbase.a/vericl.o .libs/libsaturne.lax/libcsbase.a/memkom.o .libs/libsaturne.lax/libcsbase.a/cs_post_f2c.o .libs/libsaturne.lax/libcsbase.a/cs_selector.o .libs/libsaturne.lax/libcsbase.a/usvort.o .libs/libsaturne.lax/libcsbase.a/ecrlis.o .libs/libsaturne.lax/libcsbase.a/usaste.o .libs/libsaturne.lax/libcsbase.a/memale.o .libs/libsaturne.lax/libcsbase.a/verlon.o .libs/libsaturne.lax/libcsbase.a/cs_search.o .libs/libsaturne.lax/libcsbase.a/invers.o .libs/libsaturne.lax/libcsbase.a/csprnt.o .libs/libsaturne.lax/libcsbase.a/memdyp.o .libs/libsaturne.lax/libcsbase.a/ustskw.o .libs/libsaturne.lax/libcsbase.a/vorin0.o .libs/libsaturne.lax/libcsbase.a/cs_calcium.o .libs/libsaturne.lax/libcsbase.a/itrgrp.o .libs/libsaturne.lax/libcsbase.a/usclim.o .libs/libsaturne.lax/libcsbase.a/memclg.o .libs/libsaturne.lax/libcsbase.a/tcpumx.o .libs/libsaturne.lax/libcsbase.a/cs_syr3_comm.o .libs/libsaturne.lax/libcsbase.a/vectds.o .libs/libsaturne.lax/libcsbase.a/strini.o .libs/libsaturne.lax/libcsbase.a/vortex.o .libs/libsaturne.lax/libcsbase.a/catsma.o .libs/libsaturne.lax/libcsbase.a/ussmag.o .libs/libsaturne.lax/libcsbase.a/armtps.o .libs/libsaturne.lax/libcsbase.a/causta.o .libs/libsaturne.lax/libcsbase.a/vordep.o .libs/libsaturne.lax/libcsbase.a/ustsv2.o .libs/libsaturne.lax/libcsbase.a/tsepdc.o .libs/libsaturne.lax/libcsbase.a/usdpst.o .libs/libsaturne.lax/libcsbase.a/cs_mesh_solcom.o .libs/libsaturne.lax/libcsbase.a/initi1.o .libs/libsaturne.lax/libcsbase.a/cs_join_merge.o .libs/libsaturne.lax/libcsbase.a/ustske.o .libs/libsaturne.lax/libcsbase.a/inimas.o .libs/libsaturne.lax/libcsbase.a/clca66.o .libs/libsaturne.lax/libcsbase.a/strpre.o .libs/libsaturne.lax/libcsbase.a/ustsns.o .libs/libsaturne.lax/libcsbase.a/vissma.o .libs/libsaturne.lax/libcsbase.a/vorvit.o .libs/libsaturne.lax/libcsbase.a/cs_join_mesh.o .libs/libsaturne.lax/libcsbase.a/turrij.o .libs/libsaturne.lax/libcsbase.a/clptrg.o .libs/libsaturne.lax/libcsbase.a/modpar.o .libs/libsaturne.lax/libcsbase.a/distpr.o .libs/libsaturne.lax/libcsbase.a/usnpst.o .libs/libsaturne.lax/libcsbase.a/proxav.o .libs/libsaturne.lax/libcsbase.a/vorlgv.o .libs/libsaturne.lax/libcsbase.a/covofi.o .libs/libsaturne.lax/libcsbase.a/crstgr.o .libs/libsaturne.lax/libcsbase.a/ordita.o .libs/libsaturne.lax/libcsbase.a/memcbr.o .libs/libsaturne.lax/libcsbase.a/vorver.o .libs/libsaturne.lax/libcsbase.a/haltyp.o .libs/libsaturne.lax/libcsbase.a/findpt.o .libs/libsaturne.lax/libcsbase.a/prmoy0.o .libs/libsaturne.lax/libcsbase.a/perinu.o .libs/libsaturne.lax/libcsbase.a/cs_base.o .libs/libsaturne.lax/libcsbase.a/calhyd.o .libs/libsaturne.lax/libcsbase.a/cscloc.o .libs/libsaturne.lax/libcsbase.a/cs_grid.o .libs/libsaturne.lax/libcsbase.a/dvvpst.o .libs/libsaturne.lax/libcsbase.a/cs_perio.o .libs/libsaturne.lax/libcsbase.a/vor2cl.o .libs/libsaturne.lax/libcsbase.a/memcli.o .libs/libsaturne.lax/libcsbase.a/turbkw.o .libs/libsaturne.lax/libcsbase.a/cs_join_f2c.o .libs/libsaturne.lax/libcsbase.a/vissst.o .libs/libsaturne.lax/libcsbase.a/cs_preprocessor_data.o .libs/libsaturne.lax/libcsbase.a/pergra.o 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.libs/libsaturne.lax/libcslagr.a/memla2.o .libs/libsaturne.lax/libcslagr.a/lagtri.o .libs/libsaturne.lax/libcslagr.a/uslapr.o .libs/libsaturne.lax/libcslagr.a/lagcel.o .libs/libsaturne.lax/libcslagr.a/uslain.o .libs/libsaturne.lax/libcslagr.a/memla1.o .libs/libsaturne.lax/libcslagr.a/lageli.o .libs/libsaturne.lax/libcslagr.a/lagcar.o .libs/libsaturne.lax/libcslagr.a/uslaed.o .libs/libsaturne.lax/libcslagr.a/lagrus.o .libs/libsaturne.lax/libcslagr.a/uslag1.o .libs/libsaturne.lax/libcslagr.a/lagesp.o .libs/libsaturne.lax/libcslagr.a/uslast.o .libs/libsaturne.lax/libcslagr.a/lagdeb.o .libs/libsaturne.lax/libcslagr.a/lagini.o .libs/libsaturne.lax/libcslagr.a/uslabo.o .libs/libsaturne.lax/libcslagr.a/enslag.o .libs/libsaturne.lax/libcslagr.a/lagerr.o .libs/libsaturne.lax/libcslagr.a/laglis.o .libs/libsaturne.lax/libcslagr.a/lagout.o .libs/libsaturne.lax/libcslagr.a/lagnpr.o .libs/libsaturne.lax/libcslagr.a/usladp.o .libs/libsaturne.lax/libcslagr.a/lagnwc.o .libs/libsaturne.lax/libcslagr.a/uslaen.o .libs/libsaturne.lax/libcslagr.a/laghis.o .libs/libsaturne.lax/libcslagr.a/lagpoi.o .libs/libsaturne.lax/libcslagr.a/lagsta.o .libs/libsaturne.lax/libcslagr.a/lagune.o .libs/libsaturne.lax/libcslagr.a/lagphy.o .libs/libsaturne.lax/libcslagr.a/cs_lagr.o .libs/libsaturne.lax/libcslagr.a/uslatc.o .libs/libsaturne.lax/libcslagr.a/uslatp.o .libs/libsaturne.lax/libcslagr.a/lagitg.o .libs/libsaturne.lax/libcslagr.a/lagich.o .libs/libsaturne.lax/libcslagr.a/ouestu.o .libs/libsaturne.lax/libcslagr.a/uslafe.o .libs/libsaturne.lax/libcslagr.a/lagimp.o .libs/libsaturne.lax/libcslagr.a/lagfch.o .libs/libsaturne.lax/libcslagr.a/diverv.o .libs/libsaturne.lax/libcslagr.a/cs_lagr_perio.o .libs/libsaturne.lax/libcslagr.a/laggra.o .libs/libsaturne.lax/libcslagr.a/lagitp.o .libs/libsaturne.lax/libcslagr.a/lagidp.o .libs/libsaturne.lax/libcslagr.a/lagitf.o .libs/libsaturne.lax/libcslagr.a/lagcou.o .libs/libsaturne.lax/libcslagr.a/lagipn.o .libs/libsaturne.lax/libcslagr.a/uslaru.o .libs/libsaturne.lax/libcslagr.a/uslag2.o .libs/libsaturne.lax/libcslagr.a/lagaff.o .libs/libsaturne.lax/libcslagr.a/lageqp.o .libs/libsaturne.lax/libcslagr.a/lagent.o .libs/libsaturne.lax/libcslagr.a/lagstf.o .libs/libsaturne.lax/libcsmati.a/mtimpi.o .libs/libsaturne.lax/libcsmati.a/memmat.o .libs/libsaturne.lax/libcsmati.a/mtkpdc.o .libs/libsaturne.lax/libcsmati.a/mtphyv.o .libs/libsaturne.lax/libcsmati.a/mttsns.o .libs/libsaturne.lax/libcsmati.a/mtini1.o .libs/libsaturne.lax/libcsmati.a/mttssc.o .libs/libsaturne.lax/libcsmati.a/mtproj.o .libs/libsaturne.lax/libcsmati.a/mttycl.o .libs/libsaturne.lax/libcsrayt.a/raysol.o .libs/libsaturne.lax/libcsrayt.a/raydak.o .libs/libsaturne.lax/libcsrayt.a/rayout.o .libs/libsaturne.lax/libcsrayt.a/raypar.o .libs/libsaturne.lax/libcsrayt.a/memra1.o .libs/libsaturne.lax/libcsrayt.a/raydom.o .libs/libsaturne.lax/libcsrayt.a/usray1.o .libs/libsaturne.lax/libcsrayt.a/usray5.o .libs/libsaturne.lax/libcsrayt.a/memra2.o .libs/libsaturne.lax/libcsrayt.a/usray4.o .libs/libsaturne.lax/libcsrayt.a/rayopt.o .libs/libsaturne.lax/libcsrayt.a/raycli.o .libs/libsaturne.lax/libcsrayt.a/raysca.o .libs/libsaturne.lax/libcsrayt.a/usray3.o .libs/libsaturne.lax/libcsrayt.a/usray2.o .libs/libsaturne.lax/libcsrayt.a/raydir.o .libs/libsaturne.lax/libcsrayt.a/raypun.o .libs/libsaturne.lax/libcsrayt.a/raylec.o .libs/libsaturne.lax/libcsrayt.a/memra3.o .libs/libsaturne.lax/libcsrayt.a/rmodak.o
libtool: link: ranlib .libs/libsaturne.a
libtool: link: rm -fr .libs/libsaturne.lax
libtool: link: ( cd &quot;.libs&quot; &amp;&amp; rm -f &quot;libsaturne.la&quot; &amp;&amp; ln -s &quot;../libsaturne.la&quot; &quot;libsaturne.la&quot; )
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -std=c99 -funsigned-char -pedantic -W -Wall -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wnested-externs -Wunused -Wfloat-equal -rdynamic -g -o cs_solver libsaturne.la -L/home/pat/Saturne/opt/cs-2.0-beta2/lib -lmei -L/home/pat/Saturne/opt/cs-2.0-beta2/lib -L/home/pat/Saturne/opt/cgnslib-2.5.3/lib -L/home/pat/Saturne/opt/hdf5-1.6.9/lib -lfvm -lcgns -lhdf5 -lhdf5 -L/home/pat/Saturne/opt/cs-2.0-beta2/lib -lbft -lz -L/home/pat/Saturne/opt/libxml2-2.6.32/lib -lxml2 -lblas -L/usr/lib64/gcc/x86_64-suse-linux/4.4 -L/usr/lib64/gcc/x86_64-suse-linux/4.4/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.4/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.4/../../.. -lgfortranbegin -lgfortran -lm -ldl
libtool: link: gcc -g -std=c99 -funsigned-char -pedantic -W -Wall -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wnested-externs -Wunused -Wfloat-equal -rdynamic -g -o .libs/cs_solver ./.libs/libsaturne.so -L/home/pat/Saturne/opt/cs-2.0-beta2/lib /home/pat/Saturne/opt/cs-2.0-beta2/lib/libmei.so -L/home/pat/Saturne/opt/cgnslib-2.5.3/lib -L/home/pat/Saturne/opt/hdf5-1.6.9/lib /home/pat/Saturne/opt/cs-2.0-beta2/lib/libfvm.so -lcgns /home/pat/Saturne/opt/hdf5-1.6.9/lib/libhdf5.so /home/pat/Saturne/opt/cs-2.0-beta2/lib/libbft.so -L/home/pat/Saturne/opt/libxml2-2.6.32/lib /home/pat/Saturne/opt/libxml2-2.6.32/lib/libxml2.so -lz -lblas -L/usr/lib64/gcc/x86_64-suse-linux/4.4 -L/usr/lib64/gcc/x86_64-suse-linux/4.4/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.4/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.4/../../.. -lgfortranbegin -lgfortran -lm -ldl -Wl,-rpath -Wl,/home/pat/Saturne/opt/cs-2.0-beta2/lib -Wl,-rpath -Wl,/home/pat/Saturne/opt/hdf5-1.6.9/lib -Wl,-rpath -Wl,/home/pat/Saturne/opt/libxml2-2.6.32/lib
./.libs/libsaturne.so: undefined reference to `_create_join_sync'
./.libs/libsaturne.so: undefined reference to `_destroy_join_sync'
collect2: ld returned 1 exit status
make[3]: *** [cs_solver] Fehler 1
make[3]: Leaving directory `/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src/apps'
make[2]: *** [all-recursive] Fehler 1
make[2]: Leaving directory `/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build/src'
make[1]: *** [all-recursive] Fehler 1
make[1]: Leaving directory `/home/pat/Saturne/install-200-beta2/ncs-2.0.0-beta2.build'
make: *** [all] Fehler 2[/code:1]

My setup File looks like this:
[code:1]#========================================================
# Setup file for Code_Saturne installation
#========================================================
#
#
# Download packages
#
download yes
#
#
# Language
# default: &quot;en&quot; english
# others: &quot;fr&quot; french
#
language en
#
#
# Install Code_Saturne with debugging symbols
#
debug yes
#
#
# Installation directory
#
prefix /home/pat/Saturne/opt
#
#
# Architecture Name
#
use_arch no
arch
#
#
# C compiler
#
compC
#
#
# Fortran compiler
#
compF
#
#
# MPI wrapper for C compiler
#
mpiCompC
#
#
# Disable Graphical user Interface
#
disable_gui no
#
#
# Python is mandatory to launch the Graphical User
# Interface and to use Code_Saturne scripts.
# It has to be compiled with PyQt 4 support.
#
# It is highly recommended to use the Python provided
# by the distribution and to install PyQt through
# the package manager if needed.
#
# If you need to provide your own Python, just set
# the following variable to the bin directory of Python
#
python
#
#
# BLAS For hardware-optimized Basic Linear Algebra
# Subroutines. If no system BLAS is used, one reverts
# to an internal BLAS emulation, which may be somewhat
# slower.
#
# ATLAS (or another BLAS) should be available for most
# platforms through the package manager. If using the
# Intel or IBM compilers, IMKL or ESSL may be used in
# place of ATLAS respectively.
# For a fine-tuning of BLAS library support, it may
# be necessary to install Code_Saturne Kernel manually.
#
blas
#
#
# SYRTHES installation path for an optional coupling.
#
# Only coupling with the SYRTHES thermal code version 3
# is handled at the moment.
#
# SYRTHES has to be installed before Code_Saturne for
# a correct detection. However, it is still possible to
# update the scripts after Code_Saturne installation.
#
syrthes
#
#========================================================
# Name Path Use Install
#========================================================
#
#
# Code_Saturne kernel and module libraries
#
#
bft /home/pat/Saturne/opt/cs-2.0-beta2 yes no
fvm /home/pat/Saturne/opt/cs-2.0-beta2 yes no
mei /home/pat/Saturne/opt/cs-2.0-beta2 yes no
ecs /home/pat/Saturne/opt/cs-2.0-beta2 yes no
ncs /home/pat/Saturne/opt/cs-2.0-beta2 yes yes
#
#
# Optional packages:
#
#
# MED / HDF5 For MED file format support
# (used by SALOME and now by Gmsh)
#
# CGNS For CGNS file support
# (used by many meshers)
#
# Open MPI (or MPICH2) + Metis
#
# For Linux workstations, MPI, HDF5, and even MED
# packages may be available through the package manager.
# HDF5 is also often available on large systems such as
# IBM Blue Gene or Cray XT.
#
# For massively parallel architectures, it is
# recommended to use the system's default MPI library.
#
# Metis is more rarely found in Linux distributions,
# but may already be installed on massively parallel
# machines and on clusters. For good parallel
# performance, it is highly recommended.
# For meshes larger than 15 million cells, Metis 5.0
# beta is recommended, as Metis 4 may fail above
# the 20-35 million cells. But if Metis 5.0 is chosen,
# its installation must be done manually.
#
# Libxml2 is needed to read xml files output by the
# Graphical User Interface, and swig is needed by the
# Graphical User Interface to handle mathematical
# expressions. Both should be installed by you package
# manager.
#
#
cgns /home/pat/Saturne/opt/cgnslib-2.5.3 yes no
hdf5 /home/pat/Saturne/opt/hdf5-1.6.9 yes no
med None no no
metis /home/pat/Saturne/opt/metis-4.0 yes no
mpi /home/pat/Saturne/opt/openmpi-1.3.3 yes no
libxml2 /home/pat/Saturne/opt/libxml2-2.6.32 auto no
swig /home/pat/Saturne/opt/swig-1.3.40 auto no
#
#========================================================
[/code:1]

My OS is openSuse 11.2 and i fixed the &quot;__log2&quot; problem while install Metis with set &quot;__log2&quot; in rename.h to &quot;__Log2&quot;, but i think thats not the reason for this problem.

Hope you can help me. Thanks a lot!!

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11 years 6 months ago #3736 by Antonio
I'm exactly in your situation...
trying to compile code_saturne v2.0.0-beta2 on opensuse 11.2.
Have you found a way to solve this issue?

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11 years 5 months ago #3860 by wwiki
Hello boys,

I work on installation on Code Saturne 2.0.0.

Please test :

http://wwiki.free.fr/index.php?

:blush:

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11 years 3 months ago #4044 by David Monfort
Replied by David Monfort on topic Re:Code Saturne NCS-installation fails with Error 2
Hello Patrick, Antonio.

I would strongly advise you not to try to install Code_Saturne 2.0 beta2, but rather the latest 2.0-rc1 available.
You can have a look at this thread for more information.

Patrick, concerning your application, I don't think Code_Saturne is going to fit your needs. It can indeed handle rotor/stator interaction since latest version (not yet validated though), combustion and compressible flows (less tested)... but you cannot couple these models yet.

Hope this helps.
David

ps: to finally answer your question, version beta2 had been released without fully testing its installation, and a last-minute bug had been introduced so that this version couldn't be compiled without MPI support (this bug was fixed soon after the release).

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11 years 3 months ago #4045 by David Monfort
Replied by David Monfort on topic Re:Code Saturne NCS-installation fails with Error 2
Hi wwiki,

Nice post in your blog, and thanks for your interest in the code. Feel free to also post your different tests in Code_Saturne forums as well!

David

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